Workshop 1: Network Biology: Understanding metabolic and protein interactions: Schedule
Schedule |
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| Monday, September 14 | |||
| 8:00am | Shuttle leaves for MBI | ||
| 8:45-9:00am | Welcome, overview of workshop, and introductions: Marty Golubitsky, Laszlo Barabasi, and Eivind Almaas | ||
| 9:00-10:00am | Reka Albert: Tutorial: Graph concepts and applications to protein interaction networks | ||
| 10:00-10:30am | Break | ||
| 10:30-11:30am | Ali Navid: System level analysis of cellular metabolism using constraint-based methods | ||
| 11:30-1:30pm | Lunch break | ||
| 1:30-2:30pm | Mark Gerstein: Understanding Protein Function on a Genome-scale using Networks | ||
| 2:30-3:00pm | Break | ||
| 3:00-4:00pm | Eugene Shakhnovich: Origins and Evolution of Protein Universe: a Network View | ||
| 4:30pm | Reception & Poster session | ||
| 6:30pm | Shuttle pick-up from MBI | ||
| Tuesday, September 15 | |||
| 8:00am | Shuttle leaves for MBI | ||
| 9:00-10:00am | Reka Albert: Synthesis and causal analysis of signal transduction networks | ||
| 10:00-10:30am | Break | ||
| 10:30-11:30am | Gurol Suel: Dissecting the Functional Importance of Gene Circuit Architecture | ||
| 11:30-1:30pm | Lunch break | ||
| 1:30-2:30pm | Eytan Ruppin: Towards Large Scale in Silico Modeling of Human Metabolism | ||
| 2:30-3:00pm | Break | ||
| 3:00-4:00pm | Gregory Stephanopoulos: Metabolic flux: Key indicator of cell physiology and determinant of cell and metabolic engineering | ||
| 4:00-5:00pm | Poster Session | ||
| 5:15pm | Shuttle pick-up from MBI | ||
| Wednesday, September 16 | |||
| 8:00am | Shuttle leaves for MBI | ||
| 9:00-10:00am | John Quackenbush: Network and State Space Models: Science and Science Fiction Approaches to Cell Fate Predictions | ||
| 10:00-10:30am | Break | ||
| 10:30-11:30am | Jason Papin: Integrative analysis of metabolic and transcriptional regulatory networks for human pathogens | ||
| 11:30-1:30pm | Lunch break | ||
| 1:30-2:30pm | Eivind Almaas: Insights from large-scale protein structure network on the evolution of protein function | ||
| 2:30-3:00pm | Break | ||
| 3:00-4:00pm | Jorg Stelling: Systems analysis of cellular networks under uncertainty | ||
| 4:00-5:00pm | Contributed talks ( Two 20-minute talks + 10-minute Q&A): - Peter Csermely: Changing of protein-protein interaction network modules in crisis and recovery: the role of creative elements - Stephan Schuster: Can sugars be produced from fatty acids? Elementary flux mode analysis of metabolic networks |
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| 5:15pm | Shuttle pick-up from MBI | ||
| Thursday, September 17 | |||
| 8:00am | Shuttle leaves for MBI | ||
| 9:00-10:00am | Nevan Krogan: Functional Insights from Protein-Protein and Genetic Interaction Maps | ||
| 10:00-10:30am | Break | ||
| 10:30-11:30am | Marc Vidal: Interactome networks and human disease | ||
| 11:30-1:30pm | Lunch break | ||
| 1:30-2:30pm | Laszlo Barabasi: Network Medicine: From the Human Diseasome to Comorbidity Patterns | ||
| 2:30-3:00pm | Break | ||
| 3:00-4:00pm | Alexei Vazquez | ||
| 4:00-5:00pm | Contributed talks ( Two 20-minute talks + 10-minute Q&A) - Balazs Papp: Systems biology of genetic interactions in yeast metabolism - Dan Siegal-Gaskins: The capacity for multistability in small networks |
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| 5:15pm | Shuttle pick-up from MBI | ||
| 6:00pm | Cash Bar | ||
| 7:00pm | Banquet | ||
| Friday, September 18 | |||
| 8:00am | Shuttle leaves for MBI | ||
| 9:00-10:00am | Chad Myers: The global landscape of genetic interactions in yeast | ||
| 10:00-10:30am | Break | ||
| 10:30-11:30am | Allen Holder: Computational Biology from an Operations Research Perspective | ||
| 11:30-12:00pm | Conclusion | ||
| 12:15pm | Shuttle pick-up from MBI | ||
