Schedule |
| Monday, May 7 |
| 7:45am |
Shuttle leaves for MBI |
| 8:00-8:15am |
Breakfast |
| 8:15-8:30am |
Welcome, overview of workshop, and introductions: Marty Golubitsky |
| 8:30-9:30am |
Joshua Socolar: Autonomous Boolean models of developmental gene regulatory networks |
| 9:30-10:00am |
Break |
| 10:00-11:00am |
Ruriko Yoshida: Phylogenetic tree of regulatory networks |
| 11:00-12:00pm |
Maximino Aldana: Dynamical criticality in genetic networks is an emergent property in evolution |
| 12:00-1:30pm |
Lunch break |
| 1:30-2:30pm |
Eva Christina Ackermann: Boolean versus continuous dynamics on gene regulatory networks |
| 2:30-3:30pm |
Franziska Hinkelmann: Algebraic Theory for Discrete Models in Systems Biology |
| 3:30-4:00pm |
Break |
| 4:00-5:00pm |
Discussion |
| 5:00-7:00pm |
Reception and poster session in MBI Lounge |
| 7:00pm |
Shuttle pick-up from MBI |
| Tuesday, May 8 |
| 8:00am |
Shuttle leaves for MBI |
| 8:15-8:30am |
Breakfast |
| 8:30-9:30am |
Reka Albert: Avenues toward simplified Boolean modeling of signal transduction networks |
| 9:30-10:00am |
Break |
| 10:00-11:00am |
Aniruddha Datta: Cancer Therapy Design Based on Pathway Logic |
| 11:00-12:00pm |
Ziv Bar-Joseph: Linking the Signaling Cascades and Dynamic Regulatory Networks
Controlling Cellular Responses |
| 12:00-1:30pm |
Lunch break |
| 1:30-2:30pm |
Heather Harrington: Non-parametric analysis of mass action models and data |
| 2:30-3:30pm |
Jeremy Gunawardena: Invariants - polynomial signatures of molecular networks |
| 3:30-4:00pm |
Break |
| 4:00-5:00pm |
Discussion |
| 5:15pm |
Shuttle pick-up from MBI |
| Wednesday, May 9 |
| 8:00am |
Shuttle leaves for MBI |
| 8:15-8:30am |
Breakfast |
| 8:30-9:30am |
Monika Heiner: Coloured Petri Nets for Multiscale Systems Biology |
| 9:30-10:00am |
Break |
| 10:00-11:00am |
Ilya Shmulevich: Transcriptional Regulatory Networks from the Bottom Down |
| 11:00-12:00pm |
Edward R. Dougherty: Intrinsically Bayesian Robust Structural Intervention and the Mean Objective Cost of Uncertainty in Gene Regulatory Networks |
| 12:00-1:30pm |
Lunch break |
| 1:30-4:00pm |
Informal working sessions |
| 4:00-5:00pm |
Discussion |
| 5:15pm |
Shuttle pick-up from MBI |
| Thursday, May 10 |
| 8:00am |
Shuttle leaves for MBI |
| 8:15-8:30am |
Breakfast |
| 8:30-9:30am |
Gheorghe Craciun: Persistence, permanence, and global stability of dynamical systems derived from biological interaction networks |
| 9:30-10:00am |
Break |
| 10:00-11:00am |
Paola Vera-Licona: An Algebra-Based Method to Infer the Structure and Dynamics of Gene Regulatory Networks |
| 11:00-12:00pm |
Aziz Mithani: A stochastic model for the evolution of metabolic network using neighbor dependence |
| 12:00-1:30pm |
Lunch break |
| 1:30-2:30pm |
Alan Veliz-Cuba: Reverse Engineering of Regulatory Networks Using Algebraic Geometry |
| 2:30-3:30pm |
Elisabeth Remy: Logical modelling of regulatory networks, results and challenges |
| 3:30-4:00pm |
Break |
| 4:00-5:00pm |
Discussion |
| 5:15pm |
Shuttle pick-up from MBI |
| 6:00-7:00pm |
Cash Bar |
| 7:00pm |
Banquet in the Fusion Room @ Crowne Plaza Hotel |
| Friday, May 11 |
| 8:00am |
Shuttle leaves for MBI |
| 8:15-8:30am |
Breakfast |
| 8:30-9:30am |
David Haws: Optimality of the Neighbor Joining Algorithm and Faces of the Balanced Minimum Evolution Polytope |
| 9:30-10:00am |
Break |
| 10:00-11:00am |
Anne Shiu: Chemical reaction systems with toric steady states |
| 11:00-12:00pm |
Reinhard Laubenbacher: Trends in algebraic methods for systems biology |
| 12:30pm |
One Shuttle back to hotel
One Shuttle to Columbus Airport (CMH) |
