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2007 Summer Program in Mathematical
Biology for Undergraduates
This program consists of two parts: (a) two weeks
of introductory lectures plus short projects and a computer lab,
and (b) a summer long research experience (6 weeks to be followed
immediately after the 2 weeks) devoted to projects in the interface
of mathematics, statistics, and biological sciences.
The 2007 Summer Program dates are July 9 - 20.
Program Leaders:
Dennis Pearl - Statistical phylogenetics
Dave Terman - Mathematical neuroscience
Greg Singer - Bioinformatics
Kate Calder - Environmental statistics
Joe Verducci - Chemogenomics
Week 1, July 9-13, 2007
Monday 7/9 |
| 9:00am-10:00am |
David Terman: Mathematical neuroscience
Assisted by Robert McDougal |
| 10:00am-10:30am |
Coffee break |
| 10:30am-11:30am |
David Terman: Mathematical neuroscience
Assisted by Robert McDougal |
| 11:30am-2:00pm |
Lunch break |
| 2:00pm-4:00pm |
Computer lab: Robert McDougal |
Tuesday 7/10 |
| 9:00am-10:00am |
Dennis Pearl: Statistical phylogenetics
Assisted by Jeff Pan |
| 10:00am-10:30am |
Coffee break |
| 10:30am-11:30am |
Dennis Pearl: Statistical phylogenetics
Assisted by Jeff Pan |
| 11:30am-2:00pm |
Lunch break |
| 2:00pm-4:00pm |
Computer lab: Jeff Pan |
Wednesday 7/11 |
| 9:00am-10:00am |
Kate Calder: Environmental statistics
Assisted by Candace Berrett |
| 10:00am-10:30am |
Coffee break |
| 10:30am-11:30am |
Kate Calder: Environmental statistics Assisted by Candace Berrett |
| 11:45am-12:30pm |
Tour of Biodiversity Museum |
| 12:30pm-2:00pm |
Lunch break |
| 2:00pm-4:00pm |
Computer lab: Candace Berrett |
Thursday 7/12 |
| 9:00am-10:00am |
Greg Singer: Bioinformatics |
| 10:00am-10:30am |
Coffee break |
| 10:30am-11:30am |
Greg Singer: Bioinformatics |
| 11:45am-12:30pm |
Tour of Aquatics Laboratory |
| 12:30pm-2:00pm |
Lunch break |
| 2:00pm-4:00pm |
Computer lab: Greg Singer |
Friday 7/13 |
| 9:00am-10:00am |
Joe Verducci: Chemogenomics
Assisted by Li Yu |
| 10:00am-10:30am |
Coffee break |
| 10:30am-11:30am |
Paul Blower : Chemogenomics
Assisted by Li Yu |
| 11:30am-2:00pm |
Lunch break |
| 2:00pm-4:00pm |
Computer lab: Li Yu |
Week 2, July 13-20, 2007
Team projects:
David Terman: We will explore mathematical models for mechanisms underlying
the beneficial affects of deep brain stimulation, a surgical treatment
for patients with Parkinson's disease.
Dennis Pearl: The phylogenetics project will explore the evolution and global spread of the bird flu (H5N1) virus and how this evolution may be related to the clinical course of the disease.
Kate Calder: The environmental statistics project will explore whether ice core-derived
records of precipitation accumulation across Greenland can be used to
determine historical patterns in the North Atlantic Oscillation (NAO), a
climatic phenomena that influences interannual climate variability over
large portions of Europe and North America.
Greg Singer: We will use database techniques to find human genes that are not
present in other mammalian genomes. We will then attempt to
characterize these human-specific genes.
Joe Verducci: Correlational methods will be used to relate mRNA expression to drug
activity over the NCI-60 panel of cancer cell lines.
Tuesday 7/17 (Lab tour) |
| 10:30am |
Bill Mitsch: Wetlands Research Park |
Thursday 7/19 (Lab tours) |
| 1:30pm |
Pearlly Yan: Bioinformatics lab |
| 2:15pm |
Joe Travers: Neuroscience lab |
Friday 7/20 |
| 12:30pm-1:00pm |
Students set up posters and prepare for presentations |
| 1:00pm-1:20pm |
Poster viewing |
| 1:20pm-3:00pm |
Oral presentations |
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